%% This BibTeX bibliography file was created using BibDesk.
%% http://bibdesk.sourceforge.net/


%% Created for Mark Chilenski at 2016-08-31 13:45:40 -0400 


%% Saved with string encoding Unicode (UTF-8) 



@misc{IBM2016,
	Author = {Jean Francois Puget},
	Date-Added = {2016-08-31 17:44:57 +0000},
	Date-Modified = {2016-08-31 17:45:39 +0000},
	Howpublished = {\url{https://www.ibm.com/developerworks/community/blogs/jfp/entry/A_Comparison_Of_C_Julia_Python_Numba_Cython_Scipy_and_BLAS_on_LU_Factorization?lang=en}},
	Month = {January},
	Title = {A Speed Comparison Of {C}, {J}ulia, {P}ython, {N}umba, and {C}ython on {LU} Factorization},
	Year = {2016}}

@misc{NASA2009,
	Author = {Jules Kouatchou},
	Date-Added = {2016-08-31 17:43:31 +0000},
	Date-Modified = {2016-08-31 17:44:42 +0000},
	Howpublished = {\url{https://modelingguru.nasa.gov/docs/DOC-1762}},
	Month = {November},
	Title = {Comparing {P}ython, {N}um{P}y, {M}atlab, {F}ortran, etc.},
	Year = {2009}}

@article{vanderWaltCSE2011,
	Author = {van der Walt, St\'efan and S. Chris Colbert and Ga\"el Varoquaux},
	Date-Added = {2016-08-31 17:37:09 +0000},
	Date-Modified = {2016-08-31 17:37:09 +0000},
	Doi = {10.1109/MCSE.2011.37},
	Journal = {Computing in Science and Engineering},
	Local-Url = {x-devonthink-item://3A7784F7-12C8-4474-9BA4-295E239C7B11},
	Number = {2},
	Pages = {22-30},
	Title = {The {N}um{P}y Array: A Structure for Efficient Numerical Computation},
	Url = {http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=5725236},
	Volume = {13},
	Year = {2011},
	Bdsk-Url-1 = {http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=5725236},
	Bdsk-Url-2 = {http://dx.doi.org/10.1109/MCSE.2011.37}}

@misc{FaustTRIPPy,
	Author = {Ian C Faust},
	Date-Added = {2016-01-05 18:19:06 +0000},
	Date-Modified = {2016-01-05 18:19:06 +0000},
	Howpublished = {\url{https://github.com/icfaust/TRIPPy}},
	Title = {{T}oroidal {R}adiation {I}nversion {P}rotocol ({P}ython)},
	Url = {https://github.com/icfaust/TRIPPy},
	Urldate = {November 9, 2015},
	Bdsk-Url-1 = {https://github.com/icfaust/TRIPPy}}

@misc{gptools_readthedocs,
	Author = {Chilenski, M. A.},
	Date-Added = {2015-06-23 16:53:44 +0000},
	Date-Modified = {2015-06-23 16:54:16 +0000},
	Howpublished = {\url{http://gptools.readthedocs.org/en/latest/}},
	Title = {gptools: {G}aussian processes with arbitrary derivative constraints and predictions},
	Year = {2015}}

@misc{gptools_git,
	Author = {Chilenski, M. A.},
	Date-Added = {2015-06-23 16:49:37 +0000},
	Date-Modified = {2015-06-23 16:53:38 +0000},
	Howpublished = {\url{https://github.com/markchil/gptools}},
	Title = {gptools: {G}aussian processes with arbitrary derivative constraints and predictions},
	Year = {2015}}

@article{gpr_nf,
	Author = {Chilenski, M. A. and Greenwald, M. and Marzouk, Y. and Howard, N. T. and White, A. E. and Rice, J. E. and Walk, J. R.},
	Date-Added = {2015-06-23 16:17:35 +0000},
	Date-Modified = {2015-06-23 16:19:08 +0000},
	Journal = {Nuclear Fusion},
	Number = {2},
	Pages = {023012},
	Title = {Improved profile fitting and quantification of uncertainty in experimental measurements of impurity transport coefficients using {G}aussian process regression},
	Volume = {55},
	Year = {2015}}

@misc{profiletools_readthedocs,
	Author = {Chilenski, M. A.},
	Date-Added = {2015-06-23 12:49:17 +0000},
	Date-Modified = {2015-06-23 12:50:17 +0000},
	Howpublished = {\url{http://profiletools.readthedocs.org/en/latest/}},
	Title = {profiletools: Classes for working with profile data of arbitrary dimension (online documentation)},
	Year = {2015}}

@misc{profiletools_git,
	Author = {Chilenski, M. A.},
	Date-Added = {2015-06-23 12:48:03 +0000},
	Date-Modified = {2015-06-23 12:52:16 +0000},
	Howpublished = {\url{https://github.com/markchil/profiletools}},
	Title = {profiletools: Classes for working with profile data of arbitrary dimension},
	Year = {2015}}

@misc{scipy,
	Author = {E. Jones and T. Oliphant and P. Peterson and others},
	Date-Added = {2015-01-21 16:51:48 +0000},
	Date-Modified = {2015-01-21 16:51:48 +0000},
	Title = {{S}ci{P}y: Open source scientific tools for {P}ython},
	Url = {http://www.scipy.org/},
	Year = {2001--},
	Bdsk-Url-1 = {http://www.scipy.org/}}

@book{dierckxBook,
	Author = {P. Dierckx},
	Date-Added = {2015-01-21 16:51:18 +0000},
	Date-Modified = {2015-01-21 16:51:18 +0000},
	Publisher = {Oxford University Press},
	Title = {Curve and Surface Fitting with Splines},
	Year = {1993}}

@article{MDSobjects,
	Author = {T. Fredian and J. Stillerman and G. Manduchi},
	Date-Added = {2015-01-21 16:25:52 +0000},
	Date-Modified = {2015-01-21 16:26:59 +0000},
	Journal = {Fusion Engineering and Design},
	Month = {July},
	Number = {3-4},
	Pages = {568-570},
	Title = {{MDSplus} objects---{P}ython implementation},
	Volume = {85},
	Year = {2010}}

@article{MDSplus,
	Author = {J. A. Stillerman and T. W. Fredian and K. A. Klare and G. Manduchi},
	Date-Added = {2015-01-21 16:15:47 +0000},
	Date-Modified = {2015-01-21 16:17:35 +0000},
	Journal = {Review of Scientific Instruments},
	Number = {1},
	Pages = {939-942},
	Title = {{MDSplus} data acquisition system},
	Volume = {68},
	Year = {1997}}

@article{Lao1985,
	Abstract = {An efficient method is given to reconstruct the current profile parameters,
	the plasma shape, and a current profile consistent with the magnetohydrodynamic
	equilibrium constraint from external magnetic measurements, based
	on a Picard iteration approach which approximately conserves the
	measurements. Computational efforts are reduced by parametrizing
	the current profile linearly in terms of a number of physical parameters.
	Results of detailed comparative calculations and a sensitivity study
	are described. Illustrative calculations to reconstruct the current
	profiles and plasma shapes in ohmically and auxiliarily heated Doublet
	III plasmas are given which show many interesting features of the
	current profiles.},
	Author = {L. L. Lao and H. {St. John} and R. D. Stambaugh and A. G. Kellman and W. Pfeiffer},
	File = {Lao1985.pdf:Lao1985.pdf:PDF},
	Journal = {Nuclear Fusion},
	Number = {11},
	Owner = {jrwalk},
	Pages = {1611},
	Timestamp = {2011.01.31},
	Title = {Reconstruction of current profile parameters and plasma shapes in tokamaks},
	Url = {http://stacks.iop.org/0029-5515/25/i=11/a=007},
	Volume = {25},
	Year = {1985},
	Bdsk-Url-1 = {http://stacks.iop.org/0029-5515/25/i=11/a=007}}

@misc{eqtools_git,
	Author = {Chilenski, M. A. and Faust, I. C. and Walk, J. R.},
	Date-Modified = {2015-06-23 12:49:03 +0000},
	Howpublished = {\url{https://github.com/PSFCPlasmaTools/eqtools}},
	Title = {eqtools: {P}ython tools for magnetic equilibria in tokamak plasmas (developer page)},
	Year = {2015}}

@misc{eqtools_readthedocs,
	Author = {Chilenski, M. A. and Faust, I. C. and Walk, J. R.},
	Date-Modified = {2015-06-23 12:49:14 +0000},
	Howpublished = {\url{eqtools.readthedocs.org/en/latest/}},
	Title = {eqtools: tools for interacting with magnetic equilibria (online documentation)},
	Year = {2015}}

@misc{eqtools_pypi,
	Author = {Chilenski, M. A. and Faust, I. C. and Walk, J. R.},
	Date-Modified = {2015-06-23 12:49:09 +0000},
	Howpublished = {\url{https://pypi.python.org/pypi/eqtools}},
	Title = {eqtools: {P}ython {P}ackage {I}ndex ({PyPI} distribution)},
	Year = {2015}}

@misc{GPL,
	Date-Modified = {2015-01-21 16:18:24 +0000},
	Howpublished = {\url{http://www.gnu.org/licenses/gpl.html}},
	Month = {June},
	Title = {{GNU} General Public License, version 3},
	Year = {2007}}

@article{Lekien2005,
	Abstract = {The purpose of this paper is to give a local tricubic interpolation scheme in three dimensions that is both C1 and isotropic. The algorithm is based on a specific 64 × 64 matrix that gives the relationship between the derivatives at the corners of the elements and the coefficients of the tricubic interpolant for this element. In contrast with global interpolation where the interpolated function usually depends on the whole data set, our tricubic local interpolation only uses data in a neighbourhood of an element. We show that the resulting interpolated function and its three first derivatives are continuous if one uses cubic interpolants. The implementation of the interpolator can be downloaded as a static and dynamic library for most platforms. The major difference between this work and current local interpolation schemes is that we do not separate the problem into three one-dimensional problems. This allows for a much easier and accurate computation of higher derivatives of the extrapolated field. Applications to the computation of Lagrangian coherent structures in ocean data are briefly discussed.},
	Author = {Lekien, F. and Marsden, J.},
	Doi = {10.1002/nme.1296},
	Issn = {1097-0207},
	Journal = {International Journal for Numerical Methods in Engineering},
	Keywords = {tricubic, interpolation, computational dynamics},
	Number = {3},
	Pages = {455--471},
	Publisher = {John Wiley & Sons, Ltd.},
	Title = {Tricubic interpolation in three dimensions},
	Url = {http://dx.doi.org/10.1002/nme.1296},
	Volume = {63},
	Year = {2005},
	Bdsk-Url-1 = {http://dx.doi.org/10.1002/nme.1296}}

@article{Peterson2009,
	Abstract = {In this paper we tackle the problem of connecting low-level Fortran programs to high-level Python programs. The difficulties of mixed language programming between Fortran and C are resolved in an almost compiler and platform independent way. We provide a polished software tool F2PY that can (semi-)automatically build interfaces between the Python and Fortran languages and hence almost completely hide the difficulties from the target user: a research scientist who develops a computer model using a high-performance scripting approach.},
	Author = {P. Peterson},
	Doi = {10.1504/IJCSE.2009.029165},
	Journal = {International Journal of Computational Science and Engineering},
	Keywords = {high-performance scripting, Fortran, Python, code generation, F2PY, mixed language programming},
	Number = {4},
	Pages = {296--305},
	Publisher = {Inderscience Publishers},
	Title = {{F2PY}: a tool for connecting {F}ortan and {P}ython programs},
	Volume = {4},
	Year = {2009},
	Bdsk-Url-1 = {http://dx.doi.org/10.1504/IJCSE.2009.029165}}

@article{Faust2014,
	Author = {Faust, I. and Delgado-Aparicio, L. and Bell, R. E. and Tritz, K. and Diallo, A. and Gerhardt, S. P. and LeBlanc, B. and Kozub, T. A. and Parker, R. R. and Stratton, B. C.},
	Doi = {http://dx.doi.org/10.1063/1.4890254},
	Journal = {Review of Scientific Instruments},
	Number = {11},
	Title = {Two-dimensional {AXUV}-based radiated power density diagnostics on {NSTX-U}},
	Volume = {85},
	Year = {2014},
	Bdsk-Url-1 = {http://dx.doi.org/10.1063/1.4890254}}

@article{Hughes2001,
	Author = {J. W. Hughes and D. A. Mossessian and A. E. Hubbard and E. S. Marmar and D. Johnson and D. Simon},
	Doi = {10.1063/1.1319367},
	File = {Hughes2001.pdf:Hughes2001.pdf:PDF},
	Journal = {Review of Scientific Instruments},
	Keywords = {Tokamak devices; light scattering; plasma diagnostics; plasma density; plasma temperature},
	Number = {1},
	Owner = {jrwalk},
	Pages = {1107-1110},
	Publisher = {AIP},
	Timestamp = {2010.12.17},
	Title = {High-resolution edge {T}homson scattering measurements on the {A}lcator {C}-{M}od tokamak},
	Url = {http://link.aip.org/link/?RSI/72/1107/1},
	Volume = {72},
	Year = {2001},
	Bdsk-Url-1 = {http://link.aip.org/link/?RSI/72/1107/1},
	Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.1319367}}

@article{Hughes2003,
	Author = {J. W. Hughes and D. Mossessian and K. Zhurovich and M. DeMaria and K. Jensen and A. Hubbard},
	Doi = {10.1063/1.1532764},
	File = {Hughes2003.pdf:Hughes2003.pdf:PDF},
	Journal = {Review of Scientific Instruments},
	Keywords = {Tokamak devices; plasma diagnostics; light scattering; calibration; plasma density; plasma temperature; plasma toroidal confinement; measurement by laser beam},
	Number = {3},
	Owner = {jrwalk},
	Pages = {1667-1670},
	Publisher = {AIP},
	Timestamp = {2010.12.17},
	Title = {{T}homson scattering upgrades on {A}lcator {C}-{M}od},
	Url = {http://link.aip.org/link/?RSI/74/1667/1},
	Volume = {74},
	Year = {2003},
	Bdsk-Url-1 = {http://link.aip.org/link/?RSI/74/1667/1},
	Bdsk-Url-2 = {http://dx.doi.org/10.1063/1.1532764}}

@article{Basse2007,
	Author = {Basse, N. and Dominguez, A. and Edlund, E. and Fiore, C. and Granetz, R. S. and Hubbard, A. E. and Hughes, J. W. and Hutchinson, I. H. and Irby, J. and LaBombard, B. and Lin, L. and Lin, Y. and Lipschultz, B. and Liptac, J. E. and Marmar, E. S. and Mossessian, D. A. and Parker, R. R. and Porkolab, M. and Rice, J. E. and Snipes, J. A. and Tang, V. and Terry, J. L. and Wolfe, S. M. and Wukitch, S. J. and Zhurovich, K. and Bravenec, R. V. and Phillips, P. E. and Rowan, W. L. and Kramer, G. J. and Schilling, G. and Scott, S. D. and Zweben, S. J.},
	Date-Modified = {2016-01-19 21:52:01 +0000},
	File = {Basse2007.pdf:Basse2007.pdf:PDF},
	Journal = {Fusion Science and Technology},
	Number = {3},
	Owner = {jrwalk},
	Pages = {476-507},
	Timestamp = {2014.06.17},
	Title = {Diagnostic systems on {A}lcator {C}-{M}od},
	Url = {http://www.ans.org/pubs/journals/fst/a\_1434},
	Volume = {51},
	Year = {2007},
	Bdsk-Url-1 = {http://www.ans.org/pubs/journals/fst/a_1434}}

@inproceedings{Granetz1991,
	Author = {Granetz, R.S. and Wang, L.},
	Booksubtitle = {Diagnostics for Contemporary Fusion Experiments},
	Booktitle = {International School of Plasma Physics},
	Editor = {Stott, P.E. and Akulina, D.K. and Gorini, G. and Sindoni, E.},
	Eventdate = {1991-08-27/1991-09-06},
	Location = {Varenna, Italy},
	Pages = {425-437},
	Publisher = {Editrice Compositori Bologna},
	Title = {Design of the X-ray tomography system on {A}lcator {C}-{M}od},
	Venue = {Villa Monastero},
	Year = {1991}}
